PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cc08_g12040
Common NameGSCOC_T00030536001
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Rubiaceae; Ixoroideae; Coffeeae; Coffea
Family HD-ZIP
Protein Properties Length: 311aa    MW: 34534 Da    PI: 8.6074
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cc08_g12040genomeCGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox581.6e-18141195256
                  T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                  rk+ +++k+q  +Lee F+++++++ +++  LAk+lgL  rqV vWFqNrRa+ k
  Cc08_g12040 141 RKKLRLSKDQSAILEESFKEHNTLNPKQKLGLAKRLGLRPRQVEVWFQNRRARTK 195
                  788899***********************************************98 PP

2HD-ZIP_I/II129.41.4e-41141230191
  HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                  +kk+rlsk+q+++LEesF+e+++L+p++K  la++Lgl+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+kev+eLr +l
  Cc08_g12040 141 RKKLRLSKDQSAILEESFKEHNTLNPKQKLGLAKRLGLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKEVQELR-AL 230
                  69*************************************************************************************9.55 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046182.3E-333115IPR006712HD-ZIP protein, N-terminal
SuperFamilySSF466893.01E-18130198IPR009057Homeodomain-like
PROSITE profilePS5007117.232137197IPR001356Homeobox domain
SMARTSM003895.0E-15139201IPR001356Homeobox domain
PfamPF000464.8E-16141195IPR001356Homeobox domain
CDDcd000863.89E-15141198No hitNo description
Gene3DG3DSA:1.10.10.601.4E-17146195IPR009057Homeodomain-like
PRINTSPR000315.9E-5168177IPR000047Helix-turn-helix motif
PROSITE patternPS000270172195IPR017970Homeobox, conserved site
PRINTSPR000315.9E-5177193IPR000047Helix-turn-helix motif
CDDcd146860.00392190229No hitNo description
SMARTSM003408.7E-28197240IPR003106Leucine zipper, homeobox-associated
PfamPF021831.8E-11197231IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008283Biological Processcell proliferation
GO:0009641Biological Processshade avoidance
GO:0009733Biological Processresponse to auxin
GO:0009735Biological Processresponse to cytokinin
GO:0009826Biological Processunidimensional cell growth
GO:0010016Biological Processshoot system morphogenesis
GO:0010017Biological Processred or far-red light signaling pathway
GO:0010218Biological Processresponse to far red light
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0048364Biological Processroot development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MVVDKEDLGL SLSLSFPEKR ATATNSSSSP LQLNLMPSAS PSPFGHLLQQ KSSWTDTLPP  60
SDRSMDACRV ETRAFLKGID VNRLPAATAD AEEEAGVSSP NSTISSISGK RSEREANGED  120
HELERASSRG ISDEEDGDNS RKKLRLSKDQ SAILEESFKE HNTLNPKQKL GLAKRLGLRP  180
RQVEVWFQNR RARTKLKQTE VDCEYLKRCC ESLTEENRRL QKEVQELRAL KLSPQFYMQM  240
TPPTTLTMCP SCERVGAPPP SSSSTAVPIS TPVDPRPRAL VPAHPRPIPF NPWATTPIQH  300
RPFDALHTRS *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1139145SRKKLRL
2189197RRARTKLKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011081291.11e-161PREDICTED: homeobox-leucine zipper protein HAT4-like
SwissprotQ054661e-110HAT4_ARATH; Homeobox-leucine zipper protein HAT4
TrEMBLA0A068UN800.0A0A068UN80_COFCA; Uncharacterized protein
STRINGVIT_00s0299g00100.t011e-154(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA11182485
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G16780.11e-107homeobox protein 2